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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39342347_39342920_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39342347 - 39342920
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTCAA
5'SS Class:
major
3'SS Sequence:
GTCTGTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
CGATATTTGATT
Flanking Amino Acid:
DYYYHADFLSEAALEENAYN
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1
63.9
38
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
78
0.63
0.9
72.8
37.5
Minor 5ss
29.4
-2.4
2.8
28.6
37
Minor BPS
52.3
0.15
1.5
64.93
39.9

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832