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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39343106_39344536_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39343106 - 39344536
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAGTG
5'SS Class:
strong_major
3'SS Sequence:
TCATTCATCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATC
Flanking Amino Acid:
LEQSHEELGEAGEAAQTEVV
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
72.3
37.6
Major BPS
100
1.24
0.5
100
0
Major PPT
70.4
0.46
0.9
62.9
38.1
Minor 5ss
33.4
-1.9
3.6
46.6
48.7
Minor BPS
62.7
0.38
2
79.43
36

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832
ENSAPLT00000016708
39333189 - 39365962
32774