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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39352909_39354094_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39352909 - 39354094
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGAACC
5'SS Class:
major
3'SS Sequence:
ATTTATCTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AACTATTTATCT
Flanking Amino Acid:
SVIVMADWLKIRGTLKSWTK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.3
72.5
37.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
79.2
0.66
0.8
70.9
40.1
Minor 5ss
30.2
-2.3
2.7
36.3
40.2
Minor BPS
52
0.14
1.8
68.35
42.4

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016708
39333189 - 39365962
32774
ENSAPLT00000036995
39333189 - 39390020
56832
ENSAPLT00000025836
39333189 - 39390020
56832