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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39385329_39389914_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39385329 - 39389914
Intron Length:
4586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTAAC
5'SS Class:
major
3'SS Sequence:
TATGTGTACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
TGTTCTTCAATT
Flanking Amino Acid:
LLDGELDRNSHHGDNRDSHG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.6
33.8
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
68.1
0.41
1
62.2
43.2
Minor 5ss
32.8
-2
2.7
42.3
38.4
Minor BPS
71.3
0.75
1.5
84.97
35.6

Associated Gene:

Gene:
OSBPL8
Ensembl Gene ID:
ENSAPLG00000016005
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025836
39333189 - 39390020
56832