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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3940535_3941392_F

Intron Information:

Intron Rank:
150864
Intron Class:
major
Intron Phase:
Intron Coordinates:
3940535 - 3941392
Intron Length:
858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATGTG
5'SS Class:
strong_major
3'SS Sequence:
TGACTCATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTCCTCTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
74.6
35.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
72.7
0.51
1
62.9
42.7
Minor 5ss
30.2
-2.3
3.3
39.6
46.4
Minor BPS
66.4
0.6
1.3
75.91
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031068
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046319
3940152 - 3967612
27461
ENSAPLT00000028140
3940152 - 3968803
28652
ENSAPLT00000026336
3940152 - 3969207
29056