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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39423348_39431216_R

Intron Information:

Intron Rank:
134684
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
39423348 - 39431216
Intron Length:
7869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGA
5'SS Class:
major
3'SS Sequence:
TGTCCTGAGCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TTGTCCTGAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.3
42.1
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
56.8
0.15
1.1
51
43
Minor 5ss
43.7
-0.7
2.9
56.3
47.9
Minor BPS
67.4
0.63
1.7
85.2
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019786
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044859
39422196 - 39431451
9256