Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3954646_3957623_F

Intron Information:

Intron Rank:

150858

Intron Class:

major

Intron Phase:

Intron Coordinates:

3954646 - 3957623

Intron Length:

2978

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCTA

5'SS Class:

major

3'SS Sequence:

TTGTATAATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATAAT

U12 Branch Point Sequence:

TGTTGTATAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

71.5

39.9

Major BPS

70.1

0.5

1.3

72.3

40.4

Major PPT

0.52

67.4

42.5

Minor 5ss

34.4

-1.8

3.4

47.6

47.8

Minor BPS

48.8

-0.2

2.1

60.65

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031068

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034696

3942497 - 3967612

25116

ENSAPLT00000021706

3951072 - 3969207

18136

ENSAPLT00000047586

3951072 - 3968803

17732

ENSAPLT00000019574

3940152 - 3958921

18770

ENSAPLT00000046319

3940152 - 3967612

27461

ENSAPLT00000036123

3940152 - 3967612

27461