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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39547148_39547679_R

Intron Information:

Intron Rank:
152506
Intron Class:
major
Intron Phase:
Intron Coordinates:
39547148 - 39547679
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
81.3
30.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
81.3
0.7
0.9
81.6
35.5
Minor 5ss
35.7
-1.6
3.7
55.7
48.5
Minor BPS
68.3
0.65
1.3
78.91
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029633
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021745
39547011 - 39554009
6999
ENSAPLT00000036697
39547011 - 39554009
6999