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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39547784_39553869_R

Intron Information:

Intron Rank:
152510
Intron Class:
major
Intron Phase:
Intron Coordinates:
39547784 - 39553869
Intron Length:
6086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATAA
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TTTTCCTGAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.2
34.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
84.8
0.78
0.7
76.7
32
Minor 5ss
35.2
-1.7
3.4
46.4
48.9
Minor BPS
75.6
0.78
1.5
85.18
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029633
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036697
39547011 - 39554009
6999