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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39553394_39553869_R

Intron Information:

Intron Rank:
152508
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
39553394 - 39553869
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGAATAA
5'SS Class:
major
3'SS Sequence:
GGCCTGTGTTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTGTAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
67.2
34.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
53.2
0.07
1.2
55.4
43.9
Minor 5ss
35.2
-1.7
3.4
46.4
48.9
Minor BPS
64
0.52
1.8
82.28
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029633
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021745
39547011 - 39554009
6999