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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3957667_3967493_F

Intron Information:

Intron Rank:
150862
Intron Class:
major
Intron Phase:
Intron Coordinates:
3957667 - 3967493
Intron Length:
9827

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTCTTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
54
0.1
1
59.7
32.6
Major PPT
85
0.79
0.8
79.8
31.8
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
53.3
0.18
1.9
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031068
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034696
3942497 - 3967612
25116
ENSAPLT00000021706
3951072 - 3969207
18136
ENSAPLT00000047586
3951072 - 3968803
17732
ENSAPLT00000046319
3940152 - 3967612
27461
ENSAPLT00000036123
3940152 - 3967612
27461