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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3965372_3967493_F

Intron Information:

Intron Rank:
150880
Intron Class:
major
Intron Phase:
Intron Coordinates:
3965372 - 3967493
Intron Length:
2122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TCCTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TTCTTCCTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
54
0.1
1
59.7
32.6
Major PPT
85
0.79
0.8
79.8
31.8
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
53.3
0.18
1.9
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031068
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037549
3965290 - 3971076
5787