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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39665650_39670825_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39665650 - 39670825
Intron Length:
5176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTGTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTGTTGTACT
Flanking Amino Acid:
AAINNRIDLVKYYISKGAIV
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
85
0.87
0.8
85.6
23
Major PPT
72.5
0.51
1
66.9
43.8
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
51
0.11
2.2
80.58
41.3

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968