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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39670904_39672292_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39670904 - 39672292
Intron Length:
1389

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTACATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTCTTTTACA
Flanking Amino Acid:
LNSTPLHWATRQGHLSMVVQ
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76.6
0.6
0.9
75.2
33.8
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
71.8
0.68
1.6
80.12
35.4

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968