Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3967620_3970464_F

Intron Information:

Intron Rank:

150881

Intron Class:

major

Intron Phase:

Intron Coordinates:

3967620 - 3970464

Intron Length:

2845

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

TTGATTCAAACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAT

U12 Branch Point Sequence:

TCTTATTTGATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

0.9

77.3

33.4

Major BPS

87.6

0.93

0.8

77.4

37.3

Major PPT

67.4

0.39

1.1

63.2

42.1

Minor 5ss

37.4

-1.4

3.5

52.2

Minor BPS

0.55

1.5

79.36

37.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000031068

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037549

3965290 - 3971076

5787