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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39677771_39678525_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39677771 - 39678525
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCTTCTGTAGAT
Flanking Amino Acid:
PLMWAAYRTHSVDPTRLLLT
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
88.1
0.86
0.6
81.5
30.4
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
48
-0
2.3
72.63
44.5

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968