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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39685160_39687316_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39685160 - 39687316
Intron Length:
2157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTCTGCTTTACA
Flanking Amino Acid:
GVWAMVQFLSKSFFDHSMHS
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
85.6
0.8
0.8
79.6
32.5
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
60.1
0.31
2.1
75.21
42.3

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968