Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_396853_403075_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

396853 - 403075

Intron Length:

6223

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAGGTATT

5'SS Class:

major

3'SS Sequence:

TGTTCCATCCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTCATTTCACC

Flanking Amino Acid:

PVDMDEKVRFKYPNTACELL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.8

0.7

84.6

33.2

Major BPS

100

1.24

0.5

100

Major PPT

71.3

0.48

0.9

63.2

38.2

Minor 5ss

-0.9

3.2

59.7

39.1

Minor BPS

55.2

0.15

1.9

72.69

38.2

Associated Gene:

Gene:

PPP6R2

Ensembl Gene ID:

ENSAPLG00000003046

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048408

381682 - 447727

66046

ENSAPLT00000003179

381682 - 447727

66046