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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39687418_39694958_F

Intron Information:

Intron Rank:
10
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
39687418 - 39694958
Intron Length:
7541

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
ATG|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TGACTTCAAACAC|A
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATTCCTTGACT
Flanking Amino Acid:
YVTWFFWFWNDLNFFFIHLP
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
35.4
-0.9
3.4
55
44.6
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
37.7
-0.7
3.2
51.5
41.8
Minor 5ss
99
1.63
0.6
96.7
10.2
Minor BPS
84.4
1.16
1
90.85
31.9

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968