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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39703647_39705732_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39703647 - 39705732
Intron Length:
2086

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CTTACTTTATTT
Flanking Amino Acid:
AVLLMCQMYQISCLGITTNE
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
71.3
40.1
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85.9
0.81
0.8
83.8
31.2
Minor 5ss
37.7
-1.4
3.1
47.3
48.3
Minor BPS
60.6
0.41
1.6
76.03
41.4

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968