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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39705828_39707508_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39705828 - 39707508
Intron Length:
1681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GTGGTTTTATTT
Flanking Amino Acid:
VTTTSIESPFNHGCIRNIID
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
48.8
-0
1.6
63.15
42.3

Associated Gene:

Gene:
ZDHHC17
Ensembl Gene ID:
ENSAPLG00000014034
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014683
39637888 - 39707855
69968