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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39719454_39722577_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39719454 - 39722577
Intron Length:
3124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCGCGGCCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAACGAG
U12 Branch Point Sequence:
TCCCCCGCCACC
Flanking Amino Acid:
AGPRGAELSPCTAMPNWGGG
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
42.2
-0.4
1.6
38.5
41.2
Major PPT
62.5
0.28
1
53.6
36.7
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
40.5
-0.7
2.4
51.61
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014346
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037413
39716027 - 39723741
7715