About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39734999_39761316_F

Intron Information:

Intron Rank:
142376
Intron Class:
major
Intron Phase:
Intron Coordinates:
39734999 - 39761316
Intron Length:
26318

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATAAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
70.7
0.47
1
68.5
36.5
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
66.1
0.58
1.9
88.42
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026681
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026302
39734821 - 39762882
28062