Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39784631_39785890_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

39784631 - 39785890

Intron Length:

1260

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

GTTTCACAAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTGAT

U12 Branch Point Sequence:

AATTACTGAATT

Flanking Amino Acid:

HPVTLLKLQQPSSTPVTPKS

Intron Amino Acid Position:

838

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

74.4

Major BPS

0.85

0.9

39.9

Major PPT

61.5

0.26

56.7

38.1

Minor 5ss

32.2

-2

40.3

45.3

Minor BPS

62.7

0.48

1.6

78.13

37.5

Associated Gene:

Gene:

E2F7

Ensembl Gene ID:

ENSAPLG00000014506

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015116

39784454 - 39798224

13771