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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39786310_39787477_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39786310 - 39787477
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGGACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTAACTGTACTA
Flanking Amino Acid:
PQYLYVQPTAGLSNFNFLFS
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
74.1
36
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73.1
0.52
0.9
72.5
37.7
Minor 5ss
32.7
-2
3.1
37.9
40.9
Minor BPS
45.4
-0.3
2.2
60.24
40.4

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771