About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39787749_39788620_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39787749 - 39788620
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAAG
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGGAT
U12 Branch Point Sequence:
GCCTCATTACCT
Flanking Amino Acid:
DGPLSLVVPKKPSELHKADS
Intron Amino Acid Position:
608

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
72
39.3
Major BPS
71.4
0.53
1.4
71.4
45.1
Major PPT
82
0.72
0.7
81.8
29.8
Minor 5ss
31
-2.2
3.2
38.7
46.6
Minor BPS
52.9
0.17
2
69.56
46.9

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771