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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39789162_39789990_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
39789162 - 39789990
Intron Length:
829

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTGTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTGTACTAAATG
Flanking Amino Acid:
VCRQKIDEDTRTKVCATETV
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.8
77.9
38.6
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
84.9
0.78
0.8
84.5
30.4
Minor 5ss
33.6
-1.9
2.9
40.4
45.7
Minor BPS
55.1
0.02
1.9
63.96
44.3

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771