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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39790076_39790721_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39790076 - 39790721
Intron Length:
646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TTGTTACTAACT
Flanking Amino Acid:
EPSSPRQERQACIVNSDEYC
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1.1
84.4
33.5
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
43.9
-0.7
2.6
61.4
42.9
Minor BPS
58.5
0.35
1.9
81.62
39.7

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771