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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39790917_39791285_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39790917 - 39791285
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTATTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCAAA
U12 Branch Point Sequence:
TTGTACCAAACT
Flanking Amino Acid:
IGPVEFPGKIDEPRGHNGTS
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
54.9
0.12
1.2
63
32
Major PPT
84.2
0.77
0.8
81.3
36.2
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
50.4
0.09
2.2
77.73
44.2

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771