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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39792617_39793232_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39792617 - 39793232
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTAACGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TTGTTTGTAACG
Flanking Amino Acid:
LDFSEPDCTSASANSRKDKS
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
68.8
0.42
1
63.1
42.1
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
55.4
0.03
2.1
66
42.6

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771