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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39793515_39795721_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
39793515 - 39795721
Intron Length:
2207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCACTTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
ISLDEVASILGVERRRIYDI
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
81.5
31.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
67.8
0.4
1
63
36.9
Minor 5ss
45.5
-0.5
2.5
56.3
43.3
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771