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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_39795891_39797948_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39795891 - 39797948
Intron Length:
2058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
EQNDISDSLQYDMVDDSTVD
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.8
75
35.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
31.1
-2.2
3.2
41.7
45
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
E2F7
Ensembl Gene ID:
ENSAPLG00000014506
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015116
39784454 - 39798224
13771