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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40175629_40256578_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40175629 - 40256578
Intron Length:
80950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGCT
U12 Branch Point Sequence:
CCCTCCTGCCCT
Flanking Amino Acid:
GKTQEIEDSKIYTDWANHYL
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1.1
79.9
36
Major BPS
31.3
-1.1
4.2
54.7
43.1
Major PPT
79.1
0.65
0.8
72.8
32
Minor 5ss
38.3
-1.3
2.8
50.9
45.4
Minor BPS
36.8
-0.9
3.5
59.75
49.5

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287