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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40256697_40257408_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40256697 - 40257408
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTGTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCTTTCTCACCT
Flanking Amino Acid:
VLLAEIIQIIANEKVEDING
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
68.9
38.6
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77
0.61
0.9
76.9
37.3
Minor 5ss
44.6
-0.6
2.8
57.8
46.4
Minor BPS
59.7
0.38
1.9
79.4
43

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287