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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40284733_40288057_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40284733 - 40288057
Intron Length:
3325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAAAT
Flanking Amino Acid:
GVNVQGLSAEEIRNGNLKAI
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
79.4
0.66
0.9
78.4
33.9
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
79.5
1
1.2
92.62
29

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000030444
40256579 - 40446672
190094
ENSAPLT00000024052
40175386 - 40446672
271287