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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40288236_40304615_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40288236 - 40304615
Intron Length:
16380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TATACCATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AGTTTCTGATTA
Flanking Amino Acid:
QSKTHQDMQSRLPGPSRVPA
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.2
30.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
69.5
0.44
0.9
60
41.1
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
51
0.03
1.7
63.08
37.2

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019516
40256579 - 40446672
190094