Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40301931_40304615_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40301931 - 40304615

Intron Length:

2685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTCAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TATACCATTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

AGTTTCTGATTA

Flanking Amino Acid:

GIATSQKKASRLPGPSRVPA

Intron Amino Acid Position:

245

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.2

0.76

1.2

80.2

30.6

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

69.5

0.44

0.9

41.1

Minor 5ss

34.9

-1.7

2.7

40.9

45.4

Minor BPS

0.03

1.7

63.08

37.2

Associated Gene:

Gene:

NAV3

Ensembl Gene ID:

ENSAPLG00000014672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015318

40175386 - 40446672

271287

ENSAPLT00000039035

40256579 - 40446672

190094

ENSAPLT00000030444

40256579 - 40446672

190094

ENSAPLT00000024052

40175386 - 40446672

271287

ENSAPLT00000020353

40175386 - 40446672

271287

ENSAPLT00000046946

40175386 - 40446672

271287