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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40312157_40321945_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40312157 - 40321945
Intron Length:
9789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATCAATC
Flanking Amino Acid:
NTATVAPFIYRTLSENDSTS
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
80
0.75
1
78.6
31
Major PPT
82.9
0.74
0.9
80.2
37.3
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
47.2
-0.2
1.9
59.65
38.6

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000030444
40256579 - 40446672
190094
ENSAPLT00000024052
40175386 - 40446672
271287