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Intron Name: Anas_platyrhynchos_platyrhynchos_1_40322062_40336012_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40322062 - 40336012

Intron Length:

13951

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TGGTTTCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATGCAC

U12 Branch Point Sequence:

ATGCACTGAGAT

Flanking Amino Acid:

TAKQCLEEISGEDPETRRMR

Intron Amino Acid Position:

677

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.8

83.2

28.5

Major BPS

57.3

0.18

1.4

69.3

37.7

Major PPT

81.9

0.72

0.9

73.5

41.8

Minor 5ss

36.2

-1.6

2.7

42.6

38.5

Minor BPS

43.4

-0.4

1.9

59.86

42.5

Associated Gene:

Gene:

NAV3

Ensembl Gene ID:

ENSAPLG00000014672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019516

40256579 - 40446672

190094

ENSAPLT00000039035

40256579 - 40446672

190094

ENSAPLT00000015318

40175386 - 40446672

271287

ENSAPLT00000030444

40256579 - 40446672

190094

ENSAPLT00000024052

40175386 - 40446672

271287

ENSAPLT00000020353

40175386 - 40446672

271287

ENSAPLT00000046946

40175386 - 40446672

271287