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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40336900_40340560_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40336900 - 40340560
Intron Length:
3661

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CATTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTCCCACTGATT
Flanking Amino Acid:
KSLRTDDINSGYMTDGGLNL
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
84.3
0.77
0.8
81.4
34.8
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
48
-0
1.9
70.78
40.1

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000030444
40256579 - 40446672
190094