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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40340681_40346661_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
40340681 - 40346661
Intron Length:
5981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGTG
5'SS Class:
major
3'SS Sequence:
ATGCTTCCAAAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TATTTCTGATCA
Flanking Amino Acid:
GVHDVTVDADSKDLDNISWD
Intron Amino Acid Position:
881

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.2
67.8
43.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
56.9
0.16
1.1
57.8
37.1
Minor 5ss
38.4
-1.3
3.7
55
49.2
Minor BPS
60.4
0.32
1.7
73.29
38.2

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046946
40175386 - 40446672
271287