About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40346683_40377719_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40346683 - 40377719
Intron Length:
31037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTAAA
U12 Branch Point Sequence:
AGTACGTAAAGT
Flanking Amino Acid:
DADSKDLDNISWDDSSSVSS
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
53.8
0.1
1.2
55.6
37.8
Major PPT
89.4
0.89
0.6
84.8
22.8
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
43
-0.4
2.5
63.63
46.3

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046946
40175386 - 40446672
271287