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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40386607_40386726_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40386607 - 40386726
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCAAA
5'SS Class:
major
3'SS Sequence:
TCTTTCACATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CACTCTTTCACA
Flanking Amino Acid:
SSGTGSMGSAGGLVWAANLS
Intron Amino Acid Position:
1314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
70.2
37.7
Major BPS
77.7
0.69
1
81
30.2
Major PPT
76.6
0.6
0.9
75.7
32.7
Minor 5ss
31.9
-2.1
3.1
38.5
46.8
Minor BPS
56.8
0.21
1.8
63.63
43.2

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046946
40175386 - 40446672
271287