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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40386941_40392442_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40386941 - 40392442
Intron Length:
5502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
TTTGTTTTAACA
Flanking Amino Acid:
TGSVRSTLSESMQLDRNTLP
Intron Amino Acid Position:
1258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
84.2
0.77
0.9
81
35.4
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
75.7
0.8
1.2
82.25
33.1

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000046946
40175386 - 40446672
271287