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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40392485_40394785_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40392485 - 40394785
Intron Length:
2301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACA
5'SS Class:
major
3'SS Sequence:
TGTGGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAG
U12 Branch Point Sequence:
TTGTTTTGAGCA
Flanking Amino Acid:
DRNTLPKKGLRYTPSSRQTS
Intron Amino Acid Position:
1272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
75.7
33.3
Major BPS
72.4
0.56
1.5
71.4
45.1
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
41.5
-0.9
2.6
52.1
44.5
Minor BPS
53.8
0.11
1.7
67.45
39.4

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287