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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40394947_40396854_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40394947 - 40396854
Intron Length:
1908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
CCTTGTATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ACTTCATTAATA
Flanking Amino Acid:
ATGKYHFSNLVSPTNLSQFN
Intron Amino Acid Position:
1309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
72.1
37.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.6
0.64
0.9
69.4
40.5
Minor 5ss
34.2
-1.8
3.3
41.8
44.8
Minor BPS
69.3
0.6
1.5
74.94
36.6

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000030444
40256579 - 40446672
190094
ENSAPLT00000024052
40175386 - 40446672
271287