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Intron Name: Anas_platyrhynchos_platyrhynchos_1_40399637_40405113_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

40399637 - 40405113

Intron Length:

5477

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAG

U12 Branch Point Sequence:

TTATTTCTAAGT

Flanking Amino Acid:

VSSTSSLYSTAEEKAHSEQI

Intron Amino Acid Position:

1390

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.4

0.86

0.9

87.3

Major BPS

70.6

0.51

1.5

77.9

34.9

Major PPT

89.8

0.89

0.7

84.9

29.9

Minor 5ss

36.7

-1.5

52.2

44.4

Minor BPS

54.1

0.21

1.9

76.75

Associated Gene:

Gene:

NAV3

Ensembl Gene ID:

ENSAPLG00000014672

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024052

40175386 - 40446672

271287

ENSAPLT00000020353

40175386 - 40446672

271287

ENSAPLT00000046946

40175386 - 40446672

271287

ENSAPLT00000019516

40256579 - 40446672

190094

ENSAPLT00000039035

40256579 - 40446672

190094

ENSAPLT00000015318

40175386 - 40446672

271287

ENSAPLT00000030444

40256579 - 40446672

190094