About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40407434_40416516_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40407434 - 40416516
Intron Length:
9083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTACTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TCTTCTGTTACT
Flanking Amino Acid:
ATLTSQLSANAHLVAAFEKS
Intron Amino Acid Position:
1424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
78.3
0.64
0.9
72.1
37.8
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
54
0.21
2.3
79.44
43

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000019516
40256579 - 40446672
190094
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000030444
40256579 - 40446672
190094