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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40420503_40421674_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40420503 - 40421674
Intron Length:
1172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAATATA
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TCTTGCTCTATG
Flanking Amino Acid:
KNWVNSRGSELRSSFKQAFG
Intron Amino Acid Position:
1551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
85.6
24.7
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
33.2
-1.9
2.9
41.8
44.8
Minor BPS
45
-0.5
2.3
55.22
46.2

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287