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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_40437022_40437973_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40437022 - 40437973
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
CTTCTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCTCAACA
Flanking Amino Acid:
NGFLNCKYNKCPYIIGTMNQ
Intron Amino Acid Position:
1948

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
70.7
41.3
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
88.1
0.86
0.7
80.4
31.6
Minor 5ss
33.8
-1.8
3
39
41.4
Minor BPS
77.6
0.86
1.5
83.78
36.8

Associated Gene:

Gene:
NAV3
Ensembl Gene ID:
ENSAPLG00000014672
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030444
40256579 - 40446672
190094
ENSAPLT00000015318
40175386 - 40446672
271287
ENSAPLT00000024052
40175386 - 40446672
271287
ENSAPLT00000020353
40175386 - 40446672
271287
ENSAPLT00000046946
40175386 - 40446672
271287
ENSAPLT00000039035
40256579 - 40446672
190094
ENSAPLT00000019516
40256579 - 40446672
190094